ClustalW2 is a free Multiple Sequence Alignment tool which produces biologically meaningful multiple sequence alignments of divergent Nucleotide or protein sequences.  

ClustalW2

ClustalW2 is a multiple sequence alignment tool for the alignment of DNA or protein sequences. ClustalW2 calculates the best match for the input sequences based on the parameters entered and generates an easy to interpret report. This sequence alignment report displays the optimal alignment score, the alignment between sequences in a form such that the identities,similarities and differences can be clearly seen and a guide tree of the evolutionary relationships of aligned sequences.


 INPUT

Enter or paste a set of sequences in any supported format:
a file:

JOB TITLE    
         
SET PARAMETERS        
ALIGNMENT KTUP
(WORD SIZE)		 GAP OPEN
MATRIX WINDOW
LENGTH		 GAP
EXTENSION
ITERATION SCORE TYPE GAP
DISTANCES
NUMITER        
           
OUTPUT   PHYLOGENETIC TREE  
OUTPUT
FORMAT		 TREE TYPE CORRECT DIST.
OUTPUT
ORDER		 IGNORE GAPS CLUSTERING

 
 

 

 
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